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Originally Posted by Nancy LC
I bet Kallyn can answer this question much better than I can.
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You got most of the important stuff, Nancy. You're right, the bone isotope analysis doesn't apply to just corn. You can use it to determine what percentage of the diet was meat and what percentage was green vegetation, which is particularly useful because you can then compare the isotopes in human bones to those of known carnivores and herbivores. Human remains in general show omnivorousness, but the percentages of the meat/veg isotopes of course vary depending on locale.
Dental remains are really good clues too. Herbivorous animals have very robust jawbones and large flat grinding molars to deal with the large amounts of fibrous material that they eat. Carnivores OTOH have small jaws and smaller, pointed teeth. Also, you can use microscopic analysis to look at wear patterns on the teeth to see how the creature chewed (like up-down {like a carnivore} or side-to-side {like an herbivore}) and also to get an idea of the diet (vegetation wears down teeth more than meat does). Human dentition tends much more towards carnivory than towards herbivory. In fact, it's one of the best markers of the shift to our species - as hominids evolved, the jawbones and teeth kept getting smaller and smaller as more meat was added to the diet. Cooked foods as well - you don't need a big jaw to eat cooked plant food.
You can examine stone tools and their microscopic wear patterns and try to determine what the tool was used on. You can also examine animal remains that have obvious signs of human butchery which (presumably) meant we were eating them.
If you're really lucky you can find coprolites, which are fossilized human excrement (yummm). Some places in the SW in the United States even have non-fossilized coprolites - they are just really really dessicated. Those are the best for examination, but unfortunately they are also the youngest - I think you can't really find any older than about 13k years.
Midden heaps like Nancy mentioned are great. You can find all kinds of goodies like butchered bones, discarded nut shells, etc.
Some sites can be examined microscopically for pollen residue, but whatever you're examining has to be preserved in such a way that it wouldn't have been contaminated by modern pollen. The pollen residues can tell you what plants there were in the area, which again would presumably have been exploited as a natural resource.
You can also examine modern hunter-gatherer tribes to see what kinds of subsistence patterns they have. The environments they live in today are pretty marginal and are probably not what we evolved on, but it's still useful to observe how humans in the wild exploit every natural resource that they can. It makes it much easier to hypothesize about how ancient resources would have been exploited by our ancestors.
That's all I can think of right now but I'm sure there's more. I've been out of the anthro loop for like 2 years now.