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I really question this "good/bad" bacteria theory. Perhaps it would be better to not have any bacteria in one's gut. If that is even possible. ???
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Not possible unless you live in a sterile environment... like lab rats are raised in sometimes.

However, I'm trying to reboot my gut bacteria.
Well, perhaps you should read up on the sorts of bacteria that are found in the GI tract, if it interests you. Here is a blurb in Wikipedia about it:
http://en.wikipedia.org/wiki/Gut_flora
My own form of arthritis is believed by many doctors, including my rhuematologist to be caused by intestinal permeability and a type of bacteria the body finds is an intruder, which is sometimes found in the intestines (Klebsiella pneumonia). Definitely not a good bacteria. About 1/3 of the patients respond to a no-starch diet (NSD), starch being the primary food for that bacteria. Salmonella can cause another form of reactive arthritis called Reiter's Syndrome and there is thinking now that many autoimmune diseases are caused by the same thing, bacteria the body attacks getting past the intestines into the blood stream. This is one of the reasons I won't try raw dairy products. I know I have gut problems and I don't want yet another autoimmune disease is some nasty bacteria should creep out of my intestines.
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It has been suggested that commensal bacteria are responsible for the development of colitis, since mice raised in a sterile environment do not get the disease. However, while some bacterial strains such as C. difficile and even normal gut bacteria cause colitis, others prevent the disease in mice.
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And if you're interested in more, do a search on dysbiosis.
Some AS patients have had really good luck getting out of a flare with fasting and then following a NSD. So that's what I'm about to try, given that my neck and shoulders are absolutely killing me.
Anyway, if you're interested you can read up on the Kp/AS links, it is also thought that there might be additional buglies that are linked to AS:
http://www.kickas.org/medical/index.shtml